$+
 SetVar(help_har_headline,
   "
 The <b>H</b>irshfeld <b>A</b>tom <b>R</b>efinement employs aspherical
 atomic scattering factors calculated from a theoretical density. This
 approach allows for an accurate localization of hydrogen atoms, an
 accurate determination of non-hydrogen ADPs and an anisotropic
 refinement of hydrogen atoms. It is being developed by Prof. Dylan
 Jayatilaka at the University of Western Australia in Perth in
 conjunction with Prof. Simon Grabowsky at the University of Bremen. <br>
 ~Literature~<br>
 -- (Jayatilaka & Dittrich. Acta Cryst. 2008; A64)<br>
 -- (Capelli et al. IUCrJ. 2014; 1)<br>
 -- (Woi&#324;ska et al. Sci. Adv. 2016;2)
   ")
 $-
 $+
 SetVar(help_har_basis_method,
   "
 ~Basis~
 This specifies the basis set for the calculation of the theoretical
 density. The default basis set is **def2-SVP**. **STO-3G** is
 recommended only for test purposes.


 ~Method~
 The default method used for the calculation of the theoretical density
 is **Restricted Hartee-Fock**. **Restricted Kohn-Sham** may be
 superior in some cases (especially for the treatment of hydrogen
 atoms), but tends to be unstable in some cases.
   ")
 $-



 $+
 SetVar(help_har_hydrogen,
   "
 This option specifies how hydrogen atoms are treated in HAR. Hydrogens
 can be refined anisotropically, isotropically, only positions, or kept
 fixed.
   ")
 $-





 $+
 SetVar(help_har_run_jobs,
   "
 Launch HAR jobs as a separate process. Olex2 can be closed and the
 process will continue to run. Please note, that HAR jobs can take a
 **very** long time -- from a few **hours** to a few **weeks**!
   ")
 $-




 $+
 SetVar(help_har_jobs,
   "
 HAR refinements are run as 'jobs': they are submitted to the system as
 an independent process. At the moment, Olex2 does not automatically
 monitor the progress of these jobs, but we provide a few tools here to
 help with this.
 <br>
 ~Job Name~
 Once the job is finished, the name will be displayed as a link.
 Clicking on this link will open the finished HAR structure.

 ~Timestamp~
 The time when the job was submitted.

 ~Status~
 Olex2 tries to 'guess' the status of the job from the files it finds
 in the folder. This is a temporary measure.

 ~Error~
 If the HAR refinement produces an error file, a link to this file will
 appear.

 ~Dump~
 If HAR crashes, and link to the dump file of the HAR process will appear.

 ~Analysis~
 This opens the result output file of the HAR refinement. If the plotly
 extension is installed, graphs of the data contained in these files
 will be generated and shown in the browser.
   ")
 $-



<!-- #include tool-top gui\blocks\tool-top.htm;image=#image;onclick=#onclick;1; -->

<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HEADER';help_ext=HAR Refinement;helpTxt=$GetVar(help_har_headline);1; -->
<td><font size="+1"><b>Tonto HAR Refinement Interface</b></font></td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HEADER';help_ext=HAR Basis Sets adn Method;helpTxt=$GetVar(help_har_basis_method);1; -->
   <td width="20%">
       Basis
     </td>
     <td width="30%">$+
       html.Snippet("gui/snippets/input-combo", "name=tonto_har_basis",
        "items=spy.tonto.HAR.getBasisListStr()",
        "value=GetVar('settings.tonto.HAR.basis.name')",
        "onchange=SetVar('settings.tonto.HAR.basis.name', html.GetValue('~name~'))")
      $-</td>
     <td width="20%" align='right'>
       Method
     </td>
     <td width="30%">$+
       html.Snippet("gui/snippets/input-combo", "name=tonto_method",
        "items='Restricted Hartee-Fock<-rhf;Restricted Kohn-Sham<-rks'",
        "value=GetVar('settings.tonto.HAR.method')",
        "onchange=SetVar('settings.tonto.HAR.method', html.GetValue('~name~'))")
      $-</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HYDROGEN';help_ext=HAR Hydrogen Treatment;helpTxt=$GetVar(help_har_hydrogen);1; -->
  <td width="20%">Refine Hydrogen</td>
  <td width="30%">$+
    html.Snippet("gui/snippets/input-combo", "name=tonto_har_h_refinement",
      "items='positions only;positions+Uiso;positions+Uaniso;leave_alone'",
      "value=GetVar('settings.tonto.HAR.hydrogens')",
      "onchange=SetVar('settings.tonto.HAR.hydrogens', html.GetValue('~name~'))")
   $-</td>

   <td width="20%" align="right"> Use dispersion  </td>
   <td width="30%">$+
     html.Snippet("gui/snippets/input-checkbox", "name=tonto_har_dispersion",
      "checked=GetVar('settings.tonto.HAR.dispersion')",
      "onclick=SetVar('settings.tonto.HAR.dispersion', html.GetState('~name~'))")
   $-</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HYDROGEN';help_ext=HAR Hydrogen Treatment;helpTxt=$GetVar(help_har_hydrogen);1; -->
  <td width="20%" align="left">  Cluster radius  </td>
  <td width="30%">$+
    html.Snippet("gui/snippets/input-text", "name=tonto_har_cluster_radius",
     "value=GetVar('settings.tonto.HAR.cluster.radius')",
     "onchange=SetVar('settings.tonto.HAR.cluster.radius', html.GetValue('~name~'))")
  $-</td>

  <td width="20%" align="right"> I/sig threshold </td>
  <td width="30%">$+
    html.Snippet("gui/snippets/input-text", "name=tonto_i_threshold",
     "value=GetVar('settings.tonto.HAR.intensity_threshold.value')",
     "onchange=SetVar('settings.tonto.HAR.intensity_threshold.value', html.GetValue('~name~'))")
  $-</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


 <!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HEADER';help_ext=HAR Refinement;helpTxt=$GetVar(help_har_headline);1; -->

     <!--<td width="20%">-->
       <!--Convergence-->
     <!--</td>-->
     <!--<td>$+-->
       <!--html.Snippet("gui/snippets/input-text", "name=tonto_har_convergence_val",-->
        <!--"value=GetVar('settings.tonto.HAR.convergence.value')",-->
        <!--"onchange=SetVar('settings.tonto.HAR.convergence.value', html.GetValue('~name~'))")-->
      <!--$-</td>-->

     <!--<td width="20%" align='right'>-->
       <!--Extinction-->
     <!--</td>-->
     <!--<td>$+-->
       <!--html.Snippet("gui/snippets/input-checkbox", "name=tonto_har_optimise_extinction",-->
        <!--"checked=GetVar('settings.tonto.HAR.extinction.refine')",-->
        <!--"disabled=true",-->
        <!--"onclick=SetVar('settings.tonto.HAR.extinction.refine', html.GetState('~name~'))")-->
      <!--$-</td>-->

 <!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_HEADER';help_ext=Running HAR Jobs;helpTxt=$GetVar(help_har_run_jobs);1; -->



     <td width="20%" align='left'>
       <!--Check out every-->
     </td>

     <td width="8%" >
     <!--$+-->
       <!--html.Snippet("gui/snippets/input-text", "name=checking_interval",-->
        <!--"value=0",-->
        <!--"onchange=SetVar(check_output_interval, html.GetValue('~name~'))")-->
      <!--$--->
     </td>
     <td width="10%" align='right'>
       <!--seconds-->
     </td>

     <td width="33%" >$+
       html.Snippet("gui/snippets/input-button", "name=update_info",
        "value=Check Output NOW",
        "onclick=html.Update")
     $-</td>
     <td width="33%" >$+
       html.Snippet("gui/snippets/input-button", "name=tonto_har_run",
        "value=Launch",
        "onclick=spy.tonto.HAR.launch()")
     $-</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<!-- #include tool-row-help gui\blocks\tool-row-help.htm;name='HAR_JOBS';help_ext=HAR Jobs;helpTxt=$GetVar(help_har_jobs);1; -->
$spy.tonto.HAR.list_jobs()
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<!-- #include tool-footer gui\blocks\tool-footer.htm;colspan=2;1; -->