$+
run("SetVar(refinement_output, strcat(FileName(),_refinement_output.html))")
$-

<!-- $spy.gui.get_notification() -->

<!-- #includeif fs.Exists(GetVar(refinement_output)) refinement_output GetVar(refinement_output);1; -->

<!-- #ignoreif IsFileType('ires')
<table border="0" width="100%" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Extract;1 -->
<td width='12%'>
  <b>Extract</b>
</td>
<td>
$spy.gui.cif.check_for_embedded_hkl()
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
#ignoreif -->

<table border="0" width="$GetVar(HtmlTableWidth)" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- ================================== -->
<!-- HEADER_ABOVE ---- LEAVE UNTOUCHED! -->
<!-- ================================== -->


<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Refinement-Program;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->

    <td width='12%'>
      <b>Program </b>
    </td>

    <td width='45%'>
      <table cellpadding="0" cellspacing="0">
        <tr>
          <td width='49%'>
<!-- #include program gui\snippets\snippet-program.htm;scope=snum;prg_type=refinement;width='20%';1; -->
          </td>
          <td width='2%'>
          </td>
          <td width='49%'>
<!-- #include method gui\snippets\snippet-method.htm;scope=snum;prg_type=refinement;width='20%';1; -->
          </td>
        </tr>
      </table>
    </td>

    <td align='right' width='11%'>
      <b>Cycles </b>
    </td>
      $+
        html.Snippet("gui/snippets/input-spin-td",
        "value=spy.GetParam('snum.refinement.max_cycles')",
        "name=SET_SNUM_REFINEMENT_MAX_CYCLES",
        "onchange=spy.SetMaxCycles(html.GetValue('~name~'))",
        "min=0",
        "max=200",
        )
      $-
    <td align='right' width='12%'>
      <b>Peaks </b>
    </td>
      $+
        html.Snippet("gui/snippets/input-spin-td",
        "value=math.eval(abs(spy.GetParam(snum.refinement.max_peaks)))",
        "name=SET_SNUM_REFINEMENT_MAX_PEAKS",
        "min=0",
        "max=99",
        "onchange=spy.SetMaxPeaks(html.GetValue('~name~'))",
        )
      $-
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Set-Reflection-File;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
    <td ALIGN='left' width='12%'>
      <b>hkl file </b>
    </td>

    <td ALIGN='left' width='45%'>
<!-- #include reflection-file gui\snippets\snippet-reflection-file.htm;1; -->
    </td>

    <td ALIGN='center' width='39%'>
      <b>hkl </b>:
<!-- #include reflection-date reflection-date.htm;1; -->
    </td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<!-- #ignoreif not IsFileType('ires')
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Weights,_Extinction_and_ACTA;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->

    <td width='12%'>
      <b>Weight </b>
    </td>
    <td width='4%' align='left'>
      $+
        html.Snippet("gui/snippets/input-checkbox",
        "name=SET_SNUM_REFINEMENT_UPDATE_WEIGHT",
        "checked=spy.GetParam('snum.refinement.update_weight')",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "onclick=spy.SetParam('snum.refinement.update_weight', html.GetState('~name~'))",
        )
       $-
    </td>
    <td width='31%' align='left'>
      $spy.gui.tools.weightGuiDisplay()
    </td>
    <td width='6%' align='right'>
      <b>EXTI </b>
    </td>

    <td width='5%'>
      $+
        html.Snippet("gui/snippets/input-checkbox",
        "name=SNUM_REFINEMENT_EXTI",
        "checked=not(strcmp(xf.rm.Exti(),'n/a'))",
        "oncheck=spy.SetParam(snum.refinement.refine_extinction,3)>>addins EXTI",
        "onuncheck=spy.SetParam(snum.refinement.refine_extinction,0)>>delins EXTI",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        )
       $-
    </td>

    <td width='17%'>
      $spy.gui.tools.refine_extinction()
    </td>

    <td width='22%'>
      $+
        html.Snippet("gui/snippets/input-combo",
        "name=REFINEMENT_ACTA",
        "items=No ACTA;ACTA NOHKL;ACTA",
        "value=Ins('acta')",
        "onchange=spy.actaGuiDisplay(html.GetValue('~name~'))",
        "readonly=False",
        "onchangealways=True",
        "bgcolor=spy.refinement_acta_bg_colour()",
        )
      $-
    </td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

<!-- ==================================== SOLVENT MASKING INTERFACE BEGIN == -->
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Refinement-Masks;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
    
      $+
        html.Snippet("gui/snippets/input-checkbox-td",
        "name=SNUM_REFINEMENT_USE_SOLVENT_MASK",
        "label=Use Solvent Mask ",
        "name=SNUM_REFINEMENT_USE_SOLVENT_MASK",
        "checked=spy.GetParam('snum.refinement.use_solvent_mask')",
        "onclick=spy.SetMasking(html.GetState(~name~))>>html.update()",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        )
      $-

<!-- #ignoreif not spy.GetParam('snum.refinement.use_solvent_mask')

  $+
    html.Snippet("gui/snippets/input-checkbox-td",
    "name=SNUM_REFINEMENT_USE_SOLVENT_MASK",
    "label=Update Mask",
    "name=SNUM_REFINEMENT_RECOMPUTE_MASK_BEFORE_REFINEMENT",
    "checked=spy.GetParam('snum.refinement.recompute_mask_before_refinement')",
    "oncheck=spy.SetMasking(html.GetState(~name~))>>
spy.SetParam('snum.refinement.recompute_mask_before_refinement','true')>>
html.SetState('SNUM_REFINEMENT_USE_SOLVENT_MASK', 'true')",
    "onuncheck=spy.SetParam('snum.refinement.recompute_mask_before_refinement','false')",
    "bgcolor=GetVar(HtmlTableFirstcolColour)",
    )
  $-

  <td width="11%">solvent r</td>
  <td width="10%">
    <font size="$GetVar('HtmlFontSizeControls')">
    <input
      type="text"
      name = "SET_SNUM_MASKS_SOLVENT_RADIUS"
      width="95%"
      height="GetVar('HtmlInputHeight')"
      valign="center"
      bgcolor="GetVar('HtmlTableBgColour')"
      fgcolor="GetVar('HtmlFontColour')"
      value="spy.GetParam('snum.masks.solvent_radius')"
      onchange="spy.SetParam('snum.masks.solvent_radius',html.GetValue('~name~'))"
    >
    </font>
  </td>
  <td width="11%">truncation</td>
  <td width="10%">
    <font size="$GetVar('HtmlFontSizeControls')">
    <input
      type="text"
      name = "SET_SNUM_MASKS_SHRINK_TRUNCATION_RADIUS"
      width="95%"
      height="GetVar('HtmlInputHeight')"
      valign="center"
      bgcolor="GetVar('HtmlTableBgColour')"
      fgcolor="GetVar('HtmlFontColour')"
      value="spy.GetParam('snum.masks.shrink_truncation_radius')"
      onchange="spy.SetParam('snum.masks.shrink_truncation_radius',html.GetValue('~name~'))"
    >
    </font>
  </td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->


<tr ALIGN='left' width='100%%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=Masking-Info;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
<td>
<!-- #include mask_info spy.gui.tools.get_mask_info();1; -->
</td>
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
#ignoreif -->

<!-- #ignoreif spy.GetParam('snum.refinement.use_solvent_mask')
<td>
<!-- #ignoreif fs.Exists strcat(FileName(),_mask_notification.htm)
This is the Olex2 implementation of BYPASS (a.k.a. SQUEEZE)
#ignoreif -->
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->
#ignoreif -->
<!-- ==================================== SOLVENT MASKING INTERFACE END ==== -->


<!-- ========================================== NOSPHERA2 INTERFACE BEGIN == -->
<!-- #ignoreif not spy.tools.show_nsff()
<tr ALIGN='left' width='100%'>
<!-- #include tool-help-first-column gui\blocks\tool-help-first-column.htm;help_ext=NoSpherA2;1 -->
<!-- #include row_table_on gui\blocks\row_table_on.htm;1; -->
      $+
        html.Snippet("gui/snippets/input-checkbox-td",
        "name=USE_ASPHERICAL@refine",
        "checked=False",
        "label=NoSpherA2 ",
        "height=0",
        "bgcolor=GetVar(HtmlTableFirstcolColour)",
        "td1=<td align='left' width="22%">",
        "onclick=spy.SetParam('snum.NoSpherA2.use_aspherical',False)>>html.Update()")
      $-

<!-- #include NoSpherA2_refine_interface ..\util\pyUtil\NoSpherA2\NoSpherA2_refine_interface.htm;help_ext=NoSpherA2 Refinement;1; -->
<!-- #include row_table_off gui\blocks\row_table_off.htm;1; -->

#ignoreif -->
<!-- ========================================== NOSPHERA2 INTERFACE END ==== -->
#ignoreif --> <!-- Closes if not ires -->




<!-- ================================== -->
<!-- FOOTER BELOE      LEAVE UNTOUCHED! -->
<!-- ================================== -->

</table>

<table border="0" width="100%" cellpadding="1" cellspacing="1" bgcolor="$GetVar(HtmlTableFirstcolColour)">

<!-- #includeif fs.Exists('refinement-settings-extra.htm') refinement-settings-extra refinement-settings-extra.htm;gui\blocks\tool-h3-off.htm;image=h3-Refinement-Settings-Extra;colspan=1;onclick=;onclick=;2; -->

</table>